NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0220472

Scaffold Ga0334986_0220472


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0220472 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1048
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004407Metagenome / Metatranscriptome439Y
F013635Metagenome / Metatranscriptome269Y
F017630Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0220472_1_132F017630AGGMTKPLHVINYEGKEYRIPFDLDLEIDKDQVIDVPNRFTGEKASL
Ga0334986_0220472_515_730F013635AGGMFNLKEGTKFNITFFAKKYGKYITRAGLWTEKSVEKYCKHNIEKLFTFYDLDAERYTTATGDIVLVERKDN
Ga0334986_0220472_796_1047F004407N/AMRDITNALKDYKYVKDAIDLCGALGLDINENELQRTAGVSLTIYQPENLASLIKSRRTKQDNKAVIAQFRKAKQAQAQVASVN
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