Scaffold Ga0334986_0072780

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0072780
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2115
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008991	Metagenome / Metatranscriptome	324	N
F014823	Metagenome / Metatranscriptome	259	N
F017436	Metagenome / Metatranscriptome	240	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0072780_1720_2115	F014823	N/A	VREGSQAADELTSVVAQIIYKEIKRRKEFRSLLMSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVHRQARSEKEIENLQSTAVAEKKVDLPESLEIL
Ga0334986_0072780_2_382	F017436	N/A	MDGQYRKMFRETVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIAPLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKALKDMYYFMDRLKSTTFDEWKNFLITGSTEF
Ga0334986_0072780_366_818	F008991	N/A	MITEQVEKKLEAVLKGKYDNRTIWMYYKASLQMLRDILENLIVCHHTTHSLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLKSPIVIQFCEENGWAV