Scaffold Ga0334986_0069078

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0069078
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2185
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003456	Metagenome / Metatranscriptome	485	Y
F006653	Metagenome / Metatranscriptome	367	Y
F028460	Metagenome / Metatranscriptome	191	Y
F093487	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0069078_1095_1331	F093487	N/A	MVKGETIMAVAIKPLRRRRRTAQRGKPMSQSQRWGKVVTTMPVPEGVITTTEILVPVVEEVVEVSTTEEDEDDLPELS
Ga0334986_0069078_1310_1612	F003456	GAG	MKWLRGKGVTAERLSKAGAKDEGDIVTVVAGETYILELKNRATLSLPEFWREAQVEALNYAKARGIGEVPLSYVIVKRRNASIDQAWVIQDLTQWLKEKQ
Ga0334986_0069078_1638_1847	F006653	AGGAGG	MSEQLSNKYRDNLKIDGLRADVDALKVDLTNFVGALLQSGIVELVKDEEGNIIYKINKVVLVDESVQQD
Ga0334986_0069078_1840_2067	F028460	GAG	VSQLPSLILTLGYDPTQAILKVAPVKNRFGAHTADGSKYAQLLVNYAAVQIADQNEFGWMLRRDAMTGYQGGINV