NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0043411

Scaffold Ga0334986_0043411


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0043411 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2892
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001129Metagenome / Metatranscriptome768Y
F009057Metagenome / Metatranscriptome323Y
F060863Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0043411_1952_2215F009057N/AMPTFRKFAFPDGATAEKLLGEFLQPLDFAVQVGEIDKAVCVDILFHDTCPEDLAAFVVWPAPCGVHSFSGWEEQYAADFQEFATPSK
Ga0334986_0043411_325_624F060863N/AMLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYAFFVFYSNSWQPFMQRANTDSANAAEVRFINCLEVRMYNLLNA
Ga0334986_0043411_74_325F001129N/AMLGQGGTMEFVDAAVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGKSLSAGIVISGRNGGKITDVTPSVGSVIGFTFL
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