Scaffold Ga0334986_0039175

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0039175
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3077
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0039175_1088_1225	F006842	GGAG	MKATPVICGDHLVPISECDCVNYLQELRTSAKRLIQLAKEREEMK
Ga0334986_0039175_1705_1854	F072283	AGGGGG	MNTMQDLIDKIKPILPNALIIDTDTGILIETGLELGLGGLLQTLEREGE
Ga0334986_0039175_226_489	F011646	GAGG	MSNVTELRNGSVKRIIFYEVSDSQNIAIWGGESALEALKWYRNSPNGSKIYVQEWLTDEEDAKEVSSQIEITPIVLSTIANCMDRWV