Scaffold Ga0334986_0027629

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0027629
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3776
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003459	Metagenome	485	N
F003660	Metagenome / Metatranscriptome	474	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0027629_1102_1221	F003660	N/A	MTHETKTKLKAALATGYIVLTAYLGLAFFGRFFLAIITN
Ga0334986_0027629_2335_2784	F003459	N/A	MNHLVTIPKSDISKADIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYQHDQVWSDLQASVKAREELLKMAFRNAGKATVYDEATGESVPVCPAKGTKPSIAVTFKAS