Scaffold Ga0334986_0021318

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0021318
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4410
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036202	Metagenome / Metatranscriptome	170	N
F050358	Metagenome	145	Y
F097241	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0021318_1694_1906	F050358	N/A	MGTEPTTTQLTMETIQNQLEAAKLVLSQAQTEYQHCFARGDWTACSKAKRKVAKCMKEVQYLVAQKLAVC
Ga0334986_0021318_3906_4223	F036202	N/A	MSLKLFDYDNRNKYVHQVFDNKERISPKTQYRLAGSASFGETELGDPRFHYSPVSSEHAIGMYDNDGYYCTYCPPIPTPGVSVPVGRFIRHPWAEEERRRQEAFS
Ga0334986_0021318_833_1036	F097241	N/A	MMYKSPVKSVPSELLYTGYCWETTRETYFARHNNWLKASDCRELRRLYAHRLWEECGVTVNLEEGFS