Scaffold Ga0334986_0016680

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0016680
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5089
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0016680_3833_4030	F045551	AGGAG	MTEQRELELLRPYVAACGEFVTKNAALEKHLKAIDRLLLDVLMGDIDPMQAMINRQKIKDEHEQS
Ga0334986_0016680_4023_4292	F028744	N/A	MHEFLYECDELGLALKCFFEYEPAEVGSVEPMSGMKLEPDYPEVWTLISVFLPNSNVDLSGVLHPDVIFRIEQDAPIYFEEMRREESYD
Ga0334986_0016680_4295_4540	F031377	GGAG	MITNAHEFTSVSSTNGRVTPFNTGKVQIGLMYQPPPPEMTSSEELVQAALMGWSSIHRPVPLWPVTIGSLIVGFLIILTVG
Ga0334986_0016680_4530_4775	F039000	AGGA	MGKLPHTPDKQIEQIMDNAQTLLNFCGNTFAKPSEAWYACLVSSAILTAELDVPVEVFLEGFEQAYKDAMKAKAKGASYDH