Scaffold Ga0334986

Basic Information
Taxon OID	3300034012 Open in IMG/M
Scaffold ID	Ga0334986_0010042 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034012 Open in IMG/M

Scaffold ID

Ga0334986_0010042 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6825
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6825

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002044	Metagenome / Metatranscriptome	599	Y
F002687	Metagenome / Metatranscriptome	536	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0010042_213_470	F002044	N/A	MANTRKPIKRKKINRRVVRQSPEPLSKIDQHYLALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD
Ga0334986_0010042_2309_3556	F000468	AGG	MTVWTPDWKLIVANVDYTNIAIADITHQSGRTDIYSQPNPSYMQITLVALSGQTLPFDINDSLDLQVKDSSGTYVSLFGGDITDVTVEVGNTGSLATVVNYTILAMGSLVKLAKEIYNDNLSQDEDGNQIYDLLSSVLLGSWNDVPAATTWATYSATETWLQAVNQGLGEIDQPGLYTMSSRSSDPDTVYNIASFIADSAFGYLYEAPNGDIGYADADHRQTYLAANGYVDLDGRHALGQGLSTITRSADIRNDIYINYGNNFNSQATASSPTSIGLYGYKAQTINSAIHSGTNAQEVADRYIAQRAFPLPAFQSITFPITNSEIDNSDRDNLLGVFMGQPLNIQNLPDQISGGEFEGYVEGWRWRTRFNELFLTINLSPVAFSQVAMRWNTVPISEAWNTIDPTLTWEYATIVA
Ga0334986_0010042_6161_6550	F001834	N/A	MPNQTILEQVRTPLATALSSVAGNVYSFVPESVIPPAVVCVPDSPYLEFETISKSNIRAKVNMTITVAVAYNSNPASLDNIEQLLISVLAVIPAGYIVSSVERPTVTQVGAATLLIADVRVSTYYTRTI
Ga0334986_0010042_6551_6823	F002687	N/A	QSITNADILEANVIPSGVATLSGASTYVGNAAVQSAVYTVSVNVFQARLSSGGQIEGVDFTSTPFKMGRSLFNTCVGLLGSYMDTESMCQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334986_0010042

Overview

Ecosystem & Geography

Associated Families

Sequences