NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0006270

Scaffold Ga0334986_0006270


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0006270 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8915
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (62.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008077Metagenome / Metatranscriptome339Y
F008238Metagenome / Metatranscriptome336Y
F008617Metagenome / Metatranscriptome330Y
F018140Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0006270_1069_1395F008238N/AMTFKLNLSIFKSTKPESKVDFSGMMNVKVEELDAFCAFVLSQTPDQYGSVQVPISGWKKTSQKGLAYVSAVAQPPRDWVPPVTAQSAAQSLATATDGVVSEFTEADLF
Ga0334986_0006270_1373_1597F008077N/AMNFGQWMAVELSAEQQFEIEKQARALLQSKDAGALAAALLKQTCYQQQLLQQAVNEIARLECELMGFPRTDRPR
Ga0334986_0006270_2134_2265F008617AGGMINHINNAICLLIAAAVFAMIGIESGAHHQPTHSGTQQVVRHD
Ga0334986_0006270_8525_8758F018140GAGMTEDTKTVSGVFAASLPAALAAGMVAIGALLISMQVQSARIEATIVQMAKSVDELKTDARAEMADLDKRVRALELRD

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