Scaffold Ga0334986_0005814

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0005814
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9315
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N
F059717	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0005814_1291_1836	F007361	N/A	MNGKLFQICGLPRFGSAFMSVLFSLEGDCIGLHEQGATDSNWQKSIEDYRNRYKYVADCSTYGYLPKAIVHDSVKVYVKKDAESSAKECTERFGYEVHLPSIQMLREYADKWASSHSVMTIEEGELFKVDTLRRIWIHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGNRLVKEV
Ga0334986_0005814_2383_3357	F005740	GAG	MKLIVQDIRSTIARVVGVCVDDTRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGENNGGCVGKQLVDRGTVVSYRDMSGETNSFIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGVWIDGEQLTLALPYVQSTKKFISLTGVIRQATNTSSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0334986_0005814_4153_5928	F012111	N/A	MPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGYSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSASPNLENPSNILDGWMVQAENFVVIQDGQSTPLIFNGSSLRRATTDEIKCGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLSYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEILNIAENDQTSLLWSGSAVVFDNRLLMTGQPRYNAQGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGDKFDNNIADGKKEIQWLVHTRAYNFELPFGLKRLDSGDIFIDSLDGDASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0334986_0005814_8952_9314	F059717	N/A	MSKTTGYKVLNEHMVIPGGWHYRIPETGIEVPGGSWAQLHEFVRNHYTANAIQIPSNLDDLITEYACRNGADCSYNEVNVPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRR