Scaffold Ga0334986_0005204

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0005204
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9945
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (51.72%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F004898	Metagenome / Metatranscriptome	419	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0005204_485_832	F000345	GGA	MTEKKNSWQEWWDSDACKQLQKSHKEGVERAVGKYFMLSEEDKLDMLQAICYIMCKAEEKGTSHRGLQDALGVYPAGFWVSELMDVHNALWEYYRGEKVMKELKSDLDALDNFIK
Ga0334986_0005204_5159_5284	F004898	GAGG	MDLSELIDELREIAMYESDPQDWMGYLENDDSWVPDSELAY
Ga0334986_0005204_7664_7873	F000744	GGA	MVMIETTVQLNVHEIGVILSALQELNLREENRIAREFGSVPALYNKLYSLWERMDSSQTGLRNDVVPSF
Ga0334986_0005204_7906_8169	F002243	GAG	MTAFPTLQSSDGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYVETGDNSDLPQLGNPFYGAC