Scaffold Ga0334986_0003707

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0003707
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12023
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047028	Metagenome	150	N
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0003707_1562_1981	F047028	GGAG	MSDLSRGAAALIKNLFGGNETERMISAGVVRTILSDMTRLYFENRRASGEGILVFNPENPEASKYLTKNDLENDLAVAQEGMDERAEALFSKIIRVIEKEADSDLALIAMVQSTEICVHLVDPVEANKKIDELSNSLIL
Ga0334986_0003707_1974_2294	F085646	AGGAG	MDITREIKDIRDALNSIEISLQLLVAQKDGKVTSAFVSKKTISQRLNIPSVTIDKLIHQGIVSKGESGLVEGKHYCKVDPTERNSSKFLYDPHAIMQAAWSNFTYV
Ga0334986_0003707_2424_2876	F080002	N/A	VITTYTSTAYSGNSTSELRRPCLWDDEFKIDNLPTWIYTDNQPPKDICDCEAKISSLEYTIRDIELQIEIRELELKTGSSRHSSAFDYEKWKVGALKAKQTHYYLLNAYTYWLIKNQRDALDSPSRLDKLIALLIEDPSDFETKAKALLN