NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0003467

Scaffold Ga0334986_0003467


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0003467 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12490
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034847Metagenome / Metatranscriptome173Y
F038156Metagenome / Metatranscriptome166Y
F042869Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0003467_3_113F034847AGGAMSNLVVTQDLPDFLQKAGVSALTKQLAGKSGIKRIVP
Ga0334986_0003467_4024_4248F038156GGAMKRDLYDFITPPDTPKEAHTTMYYFPHQQKSGLGLQPAGPAFRELPCMAVHYDKAWNLLFTRFIFKDGTWRDEK
Ga0334986_0003467_4468_4734F042869AGGAGMTELIGKDDTIKNYVPIGSLELKLAVAKAEGYAIRVEETRYHHVVDGMVVTSVDESKPKYYYFNDRPLPMLDPYRIAMEFYLKEKNHG
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