NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334986_0002719

Scaffold Ga0334986_0002719


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0002719 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14300
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (31.82%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F006107Metagenome / Metatranscriptome381N
F006262Metagenome / Metatranscriptome377Y
F009398Metagenome / Metatranscriptome318N
F017471Metagenome240Y
F032255Metagenome / Metatranscriptome180N
F038227Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0002719_11598_12005F006262GGAVITFTVAIKRAYLRSVYSALGGATLLAALTSKVIAAASVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIADYELAVYLLGQDGIAAPTDTQVFNKMMAVVLVAVTSYGGDFSNFRREGAIRTGMT
Ga0334986_0002719_13891_14298F017471N/ALNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRKVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVCLKTLHNTDPWKT
Ga0334986_0002719_1728_2159F032255N/AMFGVNNSDAVFTGLTSIESYDLTHEADTEEVRNSTGEVVGHIGYNERVTLNLNLIPSGSTAAAALAFCSLAPVNGTVRISGAPIIAMMGYGDILNTEDILMGGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTAGAAKVLNA
Ga0334986_0002719_2226_2708F006107GGAMNAAALRAELAVADYLAATDWSASGAGTPTCLTSYSRGLYDDPDEQDAMPNFPRIIVSTNSARPMQRTDLTCEVEIAVELQLSADDTDESAMLTAVQVLDNRILPLFDDSGASALDAPSNDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI
Ga0334986_0002719_2705_3502F005024N/AMTVDSDKFDLAMKQYLLSTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPLGNINRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTANLNGGHGLYGKRMKAAASALMKKSIGSVGYLRSAVVKSIRIYNRGFSQFQSPKWKPLSKPAGYRAPKKTNSALVAMANQYGLPEENVAVHKGTVAHGFQAVPGFNPTAFVSMRTGIADSQYNRVSEIYNTAMQKAMDDETTEMINHMAEALLANGKVLEDNGIAIK
Ga0334986_0002719_3517_3972F009398N/AMTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAMVTDANTPVPGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0334986_0002719_7176_7406F038227N/AMISLGTALNRLFPGQAGGTDLPVLRRDVLQEDDFFVLQEDGIGKIVITFGTFDSLLREDAGFLFREDDGKLQIQSN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.