Basic Information | |
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Taxon OID | 3300034012 Open in IMG/M |
Scaffold ID | Ga0334986_0002719 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14300 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (31.82%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F005024 | Metagenome / Metatranscriptome | 414 | Y |
F006107 | Metagenome / Metatranscriptome | 381 | N |
F006262 | Metagenome / Metatranscriptome | 377 | Y |
F009398 | Metagenome / Metatranscriptome | 318 | N |
F017471 | Metagenome | 240 | Y |
F032255 | Metagenome / Metatranscriptome | 180 | N |
F038227 | Metagenome / Metatranscriptome | 166 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334986_0002719_11598_12005 | F006262 | GGA | VITFTVAIKRAYLRSVYSALGGATLLAALTSKVIAAASVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIADYELAVYLLGQDGIAAPTDTQVFNKMMAVVLVAVTSYGGDFSNFRREGAIRTGMT |
Ga0334986_0002719_13891_14298 | F017471 | N/A | LNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRKVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVCLKTLHNTDPWKT |
Ga0334986_0002719_1728_2159 | F032255 | N/A | MFGVNNSDAVFTGLTSIESYDLTHEADTEEVRNSTGEVVGHIGYNERVTLNLNLIPSGSTAAAALAFCSLAPVNGTVRISGAPIIAMMGYGDILNTEDILMGGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTAGAAKVLNA |
Ga0334986_0002719_2226_2708 | F006107 | GGA | MNAAALRAELAVADYLAATDWSASGAGTPTCLTSYSRGLYDDPDEQDAMPNFPRIIVSTNSARPMQRTDLTCEVEIAVELQLSADDTDESAMLTAVQVLDNRILPLFDDSGASALDAPSNDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI |
Ga0334986_0002719_2705_3502 | F005024 | N/A | MTVDSDKFDLAMKQYLLSTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPLGNINRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTANLNGGHGLYGKRMKAAASALMKKSIGSVGYLRSAVVKSIRIYNRGFSQFQSPKWKPLSKPAGYRAPKKTNSALVAMANQYGLPEENVAVHKGTVAHGFQAVPGFNPTAFVSMRTGIADSQYNRVSEIYNTAMQKAMDDETTEMINHMAEALLANGKVLEDNGIAIK |
Ga0334986_0002719_3517_3972 | F009398 | N/A | MTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAMVTDANTPVPGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK |
Ga0334986_0002719_7176_7406 | F038227 | N/A | MISLGTALNRLFPGQAGGTDLPVLRRDVLQEDDFFVLQEDGIGKIVITFGTFDSLLREDAGFLFREDDGKLQIQSN |
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