Basic Information | |
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Taxon OID | 3300034012 Open in IMG/M |
Scaffold ID | Ga0334986_0002503 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14948 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (82.35%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006842 | Metagenome | 363 | Y |
F011484 | Metagenome | 290 | Y |
F014714 | Metagenome / Metatranscriptome | 260 | N |
F015702 | Metagenome | 252 | Y |
F017469 | Metagenome / Metatranscriptome | 240 | Y |
F026822 | Metagenome | 196 | Y |
F048091 | Metagenome | 148 | Y |
F061542 | Metagenome | 131 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334986_0002503_10139_10315 | F011484 | AGGAG | MRELEQFLNTEAEWVLERLSTGTEVNDRNYYQGRLDQLAQVRRFLGQPQIMREREGAR |
Ga0334986_0002503_4342_4524 | F061542 | AGGAGG | MICEVCRSGGELNKTGQFKRAITMHKKCKEDCGCQHQTGPGVGSLAMAMAEPMRTQYPLE |
Ga0334986_0002503_6689_7081 | F014714 | AGGTGG | LGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFDLSTIPQPKWEDKWLPITTEFANKTSRTKLVGFLKLEDGILF |
Ga0334986_0002503_8927_9097 | F026822 | GAG | MAEPRYLSGDEYALNGVELDIVKCKECASEYDYAQYHSYTCSDCEDKMIARERERV |
Ga0334986_0002503_9090_9263 | F015702 | AGGAG | MIKEIELEYTAHNLVKLSRDKWGDNATEYLAGALESVITYNQMKVLIDFLKAERTNG |
Ga0334986_0002503_9260_9394 | F017469 | AGGAG | MKTICQFCGWEVSRPDWYNDYNGKLICDNCLMDSATEREKEKAI |
Ga0334986_0002503_9391_9531 | F006842 | AGGAG | MKAIPAICGDHLVPISECDCLSYMREIASSAERLIQLAQEREELTK |
Ga0334986_0002503_9646_9912 | F048091 | AGAAGG | MIEHHFIIKYSKEEGWSWDTDSEEPRYPDGTVWNDQTEEWQGGYVGWNEEKGEAEYLDDDDLIGEQLGAILKLANEANKEREGQENEL |
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