NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0002503

Scaffold Ga0334986_0002503


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0002503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14948
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (82.35%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011484Metagenome290Y
F014714Metagenome / Metatranscriptome260N
F015702Metagenome252Y
F017469Metagenome / Metatranscriptome240Y
F026822Metagenome196Y
F048091Metagenome148Y
F061542Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0002503_10139_10315F011484AGGAGMRELEQFLNTEAEWVLERLSTGTEVNDRNYYQGRLDQLAQVRRFLGQPQIMREREGAR
Ga0334986_0002503_4342_4524F061542AGGAGGMICEVCRSGGELNKTGQFKRAITMHKKCKEDCGCQHQTGPGVGSLAMAMAEPMRTQYPLE
Ga0334986_0002503_6689_7081F014714AGGTGGLGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFDLSTIPQPKWEDKWLPITTEFANKTSRTKLVGFLKLEDGILF
Ga0334986_0002503_8927_9097F026822GAGMAEPRYLSGDEYALNGVELDIVKCKECASEYDYAQYHSYTCSDCEDKMIARERERV
Ga0334986_0002503_9090_9263F015702AGGAGMIKEIELEYTAHNLVKLSRDKWGDNATEYLAGALESVITYNQMKVLIDFLKAERTNG
Ga0334986_0002503_9260_9394F017469AGGAGMKTICQFCGWEVSRPDWYNDYNGKLICDNCLMDSATEREKEKAI
Ga0334986_0002503_9391_9531F006842AGGAGMKAIPAICGDHLVPISECDCLSYMREIASSAERLIQLAQEREELTK
Ga0334986_0002503_9646_9912F048091AGAAGGMIEHHFIIKYSKEEGWSWDTDSEEPRYPDGTVWNDQTEEWQGGYVGWNEEKGEAEYLDDDDLIGEQLGAILKLANEANKEREGQENEL

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