Scaffold Ga0334986_0002432

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0002432
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15192
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (34.38%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013412	Metagenome / Metatranscriptome	271	N
F013755	Metagenome / Metatranscriptome	268	Y
F029732	Metagenome / Metatranscriptome	187	Y
F039136	Metagenome	164	N
F058715	Metagenome	134	N
F059002	Metagenome	134	Y
F065771	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0002432_114_554	F065771	N/A	MGGVQKYLTRQVQDGEISKDDLLESQRKLSLLNQAPKLVLSAIAKGWIKYPDKLETITEEEETAKWIDTYDCERAYHNRVKGMTYREIGKLMGCGMNRVSAILHHGENIVLQRKMKSLGHTIVSIPSKATVQEHITNAKSKTKSKQ
Ga0334986_0002432_4110_4292	F029732	AGG	MKYLSKTKPTVEVEFVAEAQLRIGETKRLCVIYQRGEIFYVRPKAEFFDKFVLDEPKIQP
Ga0334986_0002432_5312_5584	F059002	N/A	MNILNEIKSGISRLLGVHKKVETKEVLRTLKPRRTAKRGRGRPKGLKIPQQIVDAVRQADKSMTNKQLAAKYRVSYFWVWSVRSNKLRLN
Ga0334986_0002432_5751_6011	F058715	GGA	VAGGKTVSLLEKLGLTKQSMEKMLGVVAPLKKTKIKRYRRYETVPADIRKAILGEHPSYTCRELAKKYGISSSTIWDIRDSKSKTE
Ga0334986_0002432_5990_6196	F013755	AGGA	MNDHIPDPTKMIRDTPISDSTPHNVAELGILCRRLERLAAVRLAYITQLEAENDAMRADLLLWREAKP
Ga0334986_0002432_7501_7755	F039136	N/A	MTIEIKYTASVFTPAGWRGVTITAKATKTSEKMALVVEVLEINGKSPKSDMSRTGASRQRFNGRGISCREVGAKKRLSACEILN
Ga0334986_0002432_8631_8960	F013412	GAG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKAYAQRVTFRSFDHEDMDAVLLLTEGTHVMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHES