NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0001408

Scaffold Ga0334986_0001408


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0001408 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20687
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (41.94%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F004130Metagenome / Metatranscriptome451Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0001408_11896_12237F004130N/AMHSPAAFLDAFVQDEVKSRCLTEEDFGAPLDNEQNDVPLQDMYNRGLVACQEGNERQNLSLSEGRPGLTGYIPSAEEGMAMGASPKPKALVLELEGPTEEMKELSAKRRGLRR
Ga0334986_0001408_14908_15315F000973GAGMAAFGIRKGLEDIAFELKGVRNILASMWHSRYQTQETDKMNPQAFADEYISTEECARRLSVSDQTIRNWIAVGKKKPEKGWTEGIHYVNIAPDSGKKAVIRIPWNFLVMSFSKNKDIDLSDFYGNKYQSTQEKLE
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