Scaffold Ga0334986_0000963

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0000963
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25157
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (29.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063618	Metagenome	129	N
F065741	Metagenome	127	N
F085402	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000963_17767_18045	F085402	GAGG	VATEKQTEVGQTHEVSEQTQVSKTISRSRKMKLKGYFKPTPKRFRVLGDSIAAASLFVAGLNLDHPKLMLISGVCGAVGKFVTNFFAEDETK
Ga0334986_0000963_1935_2528	F063618	GGAGG	MKLPKNWNQISIAQFQELQLLTEPSFDNQIKTLSILSGKKLDTIEEMRIVDITSALAKLAFMAELPTAKNVGSFRIGNTLYKFAANQHHLQAHQFIMVQDLFAEKDKWVQNLHMIMAALCVPYRIFPPKRKEVKTDDFEKIAAQFKERMPISFAYAYTLFFSLCLPELLEATQVYLEAEVAKLKKIADEKTDQQSVG
Ga0334986_0000963_2_982	F065741	N/A	MAITINTEPNDVAPVYSDISYVVTSTNYAQANFKFIAVIKNASGTTIAKLKAPIFHGTTDKGVFNISRILQNYVTYDFTQNLTAISKCNNSYLAYSVEFGEEYSGTEYLNLASDTGKYVWNGLFNLYGSETPDTYKINVTPNSAKFLTRVRPRIVTREQYDYLYFLLLGFNIEPKVMAYNAAGSVIATSYLKLPWTPSTSDTSQFMVRFGAGVVQLNALTAGELTSGTPGSVVPVGTAYYTIQFTQTIGGNFSEVYRFDVVEECSKYVPQYLYFLNPLGGFESVRCSMASRDKYSVSRKQFKRNNYTLTGNTFAYDKTKHGMTSYAT