Scaffold Ga0334986_0000576

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0000576
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32478
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025028	Metagenome	203	Y
F042806	Metagenome	157	Y
F043292	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000576_18848_19081	F043292	N/A	MYSNVPKTTRIMFKIIRLGDWVEALIHVITFGFGTRIALFVSKLIFNSDSCGCCERKQWLNRLTNKDYDGECNGIKF
Ga0334986_0000576_19954_20259	F025028	N/A	MAKFEAGHKLSKGRPKGAVNRSTEMMKVSIARATNRVLDELPKILDEMIKKDPKGAVDIALKMLEFHMPKMSRVEMKAEVEQRIQQISVNITQKSIDEPGS
Ga0334986_0000576_22739_22990	F042806	N/A	MPTPSYNSNQRKNTGVYFGPTRGKATGRNKRRGCLCVDTDIYSTECCEGALINQTIGQTQSAFNNRRGAFSNGFSNGFDVGQI