Scaffold Ga0334986_0000106

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0000106
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66098
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (83.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014143	Metagenome / Metatranscriptome	265	Y
F028486	Metagenome	191	Y
F033000	Metagenome	178	Y
F045619	Metagenome / Metatranscriptome	152	Y
F061792	Metagenome	131	Y
F093754	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000106_1299_1457	F014143	AGG	MDTTYLTKVRRIFATYDAPPETIRSYQRQWVRSIRTLGNKWLVARPVPRLES
Ga0334986_0000106_41504_41806	F045619	AGGAG	MAFVWTINSLQVMNTPEPQTVVMSNFTIAKDGQQVNYSVNLLPANPDDFTPFDQITQEQALAWTQAALGPERVTNMETEVDFLIAQAAIPTPQPAPLPWN
Ga0334986_0000106_60152_60703	F033000	AGCAGG	MELTSKNCKDCRPKRKPVAKLSAKEIHNRVQTGDMNALMAKHLREKQAQDEHNKQAIASRRRWLKVWKAELADVLAPIKWEIVSARNAWMYARRNGYVDKATFYHEYMGLLKHEKTHADMEYTLRPRRPASARWADYISPAVFTRVRDMWAVLPPVYKHSKIPLLITYRPEMGITEGERNGDN
Ga0334986_0000106_62249_62656	F028486	GGAG	MGYRSDVAYVIKFDDIETRDNFVTLMLAKNDKHITEAINDCEYRYDDDPIITFESESVKWYPDFDDVKAHRALMHDAVEIYGEEKGGRFRFISVGEDGAEDFDESDDEGDLYDYITTVHAVQTSFPYIKSTETQE
Ga0334986_0000106_62662_63639	F061792	AGGAG	MAYICRNYQEAELLFEDRGAVRSSKWQPNERPLDPKPVAHHRLIQGSNSYGKYFDVKLYQTIMARFYEPKVEDGKRVERRLYMGHASQTSMQFMRHTLRVECGVNTIWDDEMLVDDRTIMPIYTKHFMVDEDNTPFSLDAVFVDGKLDTAESEHTKHYRLVADTDVRKYKAKVAAHFEPYIMLAQMRMPEFKAECNLDYKYGQAFGGEGYNRAYYMAIQEMWNDPEPRQQDIDVFFEMCQSAYNIIASKRGADQEGFQMKGSWYTRNTTTDHTVDDLKKPIEMVEFRRAILDRIQKYVGSNSLKKPEEVKQFPKHSEYPRSNIHT
Ga0334986_0000106_7495_7836	F093754	AGGAG	MGKMKEIMLNASQIAIANRQGIPLERYAELLSTQAPIVTMNVFNPNNHPVYSIPLSELVNLWRAKFGDTWIDVSELDDDFWEDASARLHKNKLMEELDHHSGNTPWARLKEDA