Basic Information | |
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Taxon OID | 3300034007 Open in IMG/M |
Scaffold ID | Ga0334936_035815 Open in IMG/M |
Source Dataset Name | Biocrust microbial communities from Mojave Desert, California, United States - 32SMC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1033 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 34.7856 | Long. (o) | -115.66 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F074397 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334936_035815_1_564 | F074397 | AGGAGG | VFRLKRVVGIVFGATLLASLVLGGTAFAQGEKSAQLELTPSRDSGVSGTAILTDVEGGVKVELSMKGLPEEGVKHINHIHGGGTCADDRDGRTAPVTIPLNTVVANADGTGSATTTLKDVTLDQLLGKDQHRFVLLHAKVEKGQGVPPGISCADLPQKSANTTFENLPSSGGLPPKVLLIVPLVLLVM |
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