NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334934_015270

Scaffold Ga0334934_015270


Overview

Basic Information
Taxon OID3300034006 Open in IMG/M
Scaffold IDGa0334934_015270 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 30SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1032
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334934_015270_141_305F081092AGGLSGYDDFVERLESALADEESREDFLAYLQGLTGEGRAEILAGADRLEEEEADIA
Ga0334934_015270_546_788F091480AGGMRDLHVYVAPVAPEARGEHTSFYTRRADGPYYRWFYAEGSGRWRYSRVNLDRLTLRVLCVARWEAVPTTLRDRLGEHYLE

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