NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334934_000002

Scaffold Ga0334934_000002


Overview

Basic Information
Taxon OID3300034006 Open in IMG/M
Scaffold IDGa0334934_000002 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 30SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)933167
Total Scaffold Genes782 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)477 (61.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000265Metagenome / Metatranscriptome1420Y
F014784Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0334934_000002_176229_176462F000265GAGGMPELRGVQATPEVKEEWERAYEVFMQAKGDPYDTKKDRTERINFVARTLNLTRKQAKRRIKNYEQWQRNIKKGLVKP
Ga0334934_000002_185436_186170F014784GAGLREFLDISTDTSLLRPGAIEPDLSGGMAEQLDFFNIEWHIIPSAEALPVDERYLSRFYAQAPKGFAEPREHAALSYQEVIVNGHRKHQGQIIGVETTQKPRYLPGNRQFYGTFYGFDATRDPFNFYLGRANMTNGTRFDHNYLSLREFLSVVNEDWRARRAMPKGYRLTICPPAVFNFVGSIFHPEWSETESLELGFYRDEAGNATCYGVGSNAPNDFSYISEVELETDWTLLGFRTALVPEAT
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