NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334919_000028

Scaffold Ga0334919_000028


Overview

Basic Information
Taxon OID3300034001 Open in IMG/M
Scaffold IDGa0334919_000028 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 15HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)158269
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (67.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014784Metagenome / Metatranscriptome260Y
F068443Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334919_000028_89970_90725F014784AGGAGMAGIEERVRKLREFFGLRADAELIAGGAAKFESQPEVAEGLGHFNIEWHVIPSTEVLPLDDSYFTQLYPMAPRDFMKPGERGPSYRERLVGGHRQHQGLVIGVETTPKPRYLPGKRQFYGTLYGHDATIDPFAVYMGRAGMMNGTRYDHNYLSLREFIRVVGDDWRARSIMPAGYRVTVCPPAVFNLVGTVFHPEWSDTETLELGFYSDEQGNATCYAVGSNALGDFSYINEVEGEAEWSLMGFRLALVPE
Ga0334919_000028_95906_96550F068443N/AMLRAARHIHRYPASDTKRGRPGRWKREDLLKVSARLTDILDRETSSHISLASFVDHYLRLLNFPADVLQALAAGDINLFEAEQLARVISERLGVSPAQARRTRADLLSTHLQARLSGERLRHRVAALLRASSAEARALGDNDSDQDLEDFDPYDPTHLFWDQIKQLGFAFRDIRREDVTDEEVEELLKASEPVLVILNRIRRRREKKSAPKLII
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