Scaffold Ga0310134_001705

Overview

Basic Information

• Taxon OID: 3300033999
• Scaffold ID: Ga0310134_001705
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15148
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F066897	Metagenome / Metatranscriptome	126	Y
F082560	Metagenome	113	N
F103496	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310134_001705_3225_3569	F082560	GGAGG	VSEKFVVKKIQEWFKSKGGVCHKVHGGPMSAGFPDIIGCIKGRTWVVEVKVPGAKPRVPKAKRNEAPQEMQEWLAMGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEGQI
Ga0310134_001705_4878_5195	F066897	AGGAGG	MNSKWFWLIIIAIILTSAVFLWHNHTSTQELLLQTKETIETTKEILEKNKNALQKIDEITQKMQDVTRIAKEAGDERVKEIKFVSDDSFLNIVNKYSTLMVERVE
Ga0310134_001705_5192_5422	F103496	AGG	MPIDDKIRRLPLTKLIALCFTIFTCVLIILDVTSLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTAERRKDS
Ga0310134_001705_5424_5771	F022008	GGTGG	MNDIEFLREALNDLSKQLQTLSEDNRASFGRIYDRLTKIETQMTEREHQFNRYEKTLNNHEKRIRAVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGE