Scaffold Ga0334979_0063924

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334979_0063924

Scaffold Ga0334979_0063924

Overview

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0063924 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2354
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005480	Metagenome / Metatranscriptome	399	Y
F027413	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0063924_2140_2352	F005480	GGAGG	MATVTPNFNWPVPTSTDLVKDGATAIEALGDSIDASLVDLKGGTSGQVLSKNSNTDMDFVWVTSDDANAIQ
Ga0334979_0063924_965_2140	F027413	N/A	MATGRDDIDLQCNAGYARMEIVNVNNTAFDIDVTDILTLELKNSSGTYVPVFGGTVSDFGISVRSPEEVGFITIGNILAVGSLAKLTKALFPDALPKTEDGNQIFDILNELLINSWFEVAPALQWFNYDPTTTWADAENVGLGEIDQPGLYEMISRSADPFSSYNLCAQIAQSALGNMYEDKAGRVCYADADHRTAYLSANGYTTISANYATPSSVKSILQIGKIRNSLVFNYGNNYNNQATALDAASIANYGRYQRSVSSNLHNLSDVNDVMDRELGLRAIPREQLQAITFRLDNSELPDAERNKLINVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPSNLVWTGVNATLIWEDAFGGLT

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