NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0063924

Scaffold Ga0334979_0063924


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0063924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2354
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005480Metagenome / Metatranscriptome399Y
F027413Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0063924_2140_2352F005480GGAGGMATVTPNFNWPVPTSTDLVKDGATAIEALGDSIDASLVDLKGGTSGQVLSKNSNTDMDFVWVTSDDANAIQ
Ga0334979_0063924_965_2140F027413N/AMATGRDDIDLQCNAGYARMEIVNVNNTAFDIDVTDILTLELKNSSGTYVPVFGGTVSDFGISVRSPEEVGFITIGNILAVGSLAKLTKALFPDALPKTEDGNQIFDILNELLINSWFEVAPALQWFNYDPTTTWADAENVGLGEIDQPGLYEMISRSADPFSSYNLCAQIAQSALGNMYEDKAGRVCYADADHRTAYLSANGYTTISANYATPSSVKSILQIGKIRNSLVFNYGNNYNNQATALDAASIANYGRYQRSVSSNLHNLSDVNDVMDRELGLRAIPREQLQAITFRLDNSELPDAERNKLINVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPSNLVWTGVNATLIWEDAFGGLT

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