Scaffold Ga0334979_0051599

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0051599
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2665
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009954	Metagenome / Metatranscriptome	310	Y
F016152	Metagenome / Metatranscriptome	249	Y
F031365	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0051599_2_439	F031365	AGGA	MSKDAIVLTGVKETLKALESFDKQAVKEFTKVINSELSVAKKDAQGFVAGAPPLSGWNTQPPKKPRTRGGAGWPAWDQSVIRQGISSTKAEGKVRKDYTTSAGALKNKSAAGVIYELAGRTNRSGRFISNLEKRESQASRLIWKSV
Ga0334979_0051599_440_547	F016152	N/A	MISVETGISPVDLMDAPDGVLEAIVIYLKEKNKDH
Ga0334979_0051599_562_840	F009954	AGAAGG	MDGLHIKVKTTDGFEGLLSLRPRSIVAFEQKFGKGFAKLLGEDQKLEHIYFLAWSALKDSGKVVKPWGESFLDTLDSVELVVDPNLESTETA