Scaffold Ga0334979_0033717

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0033717
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3393
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F018135	Metagenome	236	Y
F031792	Metagenome	181	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0033717_1245_1403	F086805	AGGAGG	MRELSKRGNLVVGIAIGLLAAGLIWVSGHVWYVPGEGYCIGTILECYGPDFH
Ga0334979_0033717_2212_2370	F018135	AGG	MTIERVKHSGAYVISEIAGEGSNAYLFTRTYYGYTLAQAKTQFRIAIEGEVA
Ga0334979_0033717_2717_2926	F031792	GAGG	MVMGYEPELNDPVFYGVEEEVEPIKCFRCSDELDEEEIVWADVEGQIVKEGNDTAWCVSCLPSEGDSNE
Ga0334979_0033717_2986_3147	F000821	GAGG	MNDEYLRAKANLCLNQAEKDLKQEEIAKAIKNLERANSALSRLFGLEGEADDN