NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0033695

Scaffold Ga0334979_0033695


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0033695 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3394
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F019647Metagenome / Metatranscriptome228N
F045094Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0033695_1218_1445F045094N/AMDDYKIKGTTEEDVDKAINKIFRYELLDDAQQVLFNEIMTEALDVPWIAEQLTDVWDRYNQEILDCKKEDYYENR
Ga0334979_0033695_1867_2514F003786N/AMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRLFSAETLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQVQMEERGKAEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0334979_0033695_827_1231F019647AGAAGMKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEPQTMPAPTEQSDKPDLAAMVFELSAIYSQAYIDIYNKISEAGVPHENATAATSTIFIQVFQKLR
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