Scaffold Ga0334979_0031847

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0031847
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3508
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007415	Metagenome / Metatranscriptome	351	Y
F068569	Metagenome / Metatranscriptome	124	N
F092039	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0031847_2558_2806	F068569	N/A	MDTKGKPMIKLQTLVLRIFGVFGSSALAAVAGGAIFGVELWKSAAIAGVVAAGKVTEALLRSWSEDGTLTKEEVAAAFGKKA
Ga0334979_0031847_46_285	F092039	N/A	MALVYWADACGGDPGWISLDEVEDDGETMVQTVGFLLAQDDAGGKPNHVTLLQSFHDGEGINLFYIPVAMVRKIILLSS
Ga0334979_0031847_840_1367	F007415	GAGG	MPRKYSYYPAFDGKGAQPGTVKLVALCAAKWKTKNMGIYSVRLMRNSHTAGKKIGDPGMDKFLSVHSTGAACDVGYSDRKVGVAIWDFLLAHTKELGIEEIHDYAFDANPKDKNQGYGRGFRCSRGENAAGVKIFTATDNAGSFGGKWLHVELSPAMAKDADKFAKAWESCSKPA