Scaffold Ga0334979_0029069

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0029069
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3689
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042221	Metagenome	158	Y
F049495	Metagenome	146	Y
F051781	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0029069_1096_1338	F042221	N/A	MITEDDEFERIEREIKYKLDSTRSAVVADDYYWIPIDEHTPTGVKVLLLGRSGVATMGHYEALPGTQFWTHWAPLPRKRP
Ga0334979_0029069_3120_3383	F051781	AGGAG	MSILEEIAVNRAPSHIVRHAGLELQKKTKETLGPYVEREKQPGEVKAAEMNIWNRTTYRTGDGDHTAQVPREGSLRAFSLPSRGNRT
Ga0334979_0029069_808_984	F049495	AGGA	MNDLPNFAAWERQTLDKFALDAYLRLQAQQEALEQLRQDLRDAMKLLRKNPSSLLVND