NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0018186

Scaffold Ga0334979_0018186


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0018186 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4770
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005529Metagenome / Metatranscriptome397Y
F008073Metagenome339Y
F044503Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0018186_2627_3256F008073N/AMREIILKHLQKMEFVCGLKQFKEYKESDAIELTECIHKLFKSFGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSVWINQYYAHHQSQIVQEVQAMNQVHREPTEEEIAQWIEIGKQIFRNNYQSAKESGFCKDLAEWGGNWFSKFQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLI
Ga0334979_0018186_4114_4263F044503N/AMRGRNLTEYDKERIFELWQDRTTTKVIAVELGRSYACIYFHLKRRNLVG
Ga0334979_0018186_806_1057F005529N/AMARGLPKSKLDYSLEIRYKESSGKWSAWMNKGKGTFQSIEIVQRQIRLLAASYYGRQKEIRFEWNGWLCDFAGLPTGEVISLK
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