NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0009056

Scaffold Ga0334979_0009056


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0009056 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6904
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002036Metagenome / Metatranscriptome600Y
F020681Metagenome / Metatranscriptome222Y
F032636Metagenome179Y
F037698Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0009056_2858_2968F032636N/AMTDRSDTIKGIMGRETDYKDRTIDDHIDELEDLGVI
Ga0334979_0009056_475_594F037698AGGAGMCADHDEMTHEINWAYQNQLHKQWLLDNPDAQYIGWMSI
Ga0334979_0009056_570_902F020681GGAMKSLNVKYATHLYEGFMLQFQQFLKVLAGLVKMVNFRCNFCSANTEFEWLDGYPEADGFRVYQCLKCCAVGTKNIAEATDTQEPVMRCTKCGSWMFADKECHTCALIMMK
Ga0334979_0009056_6097_6903F002036N/AAAETWSGYLATETWANAQNIGLGEIDAGLYTMSSRSANPDTIYNIASQIADSALGYMYEDNEGNIGYADADHRQTYLLANGYTELSANTALGSGLRTLTKSADIRNDIYINYGNNFNNEATATDTASIALYGYKGETINSAIHDGTDAQEIADRYISLRAYPYATFDSITFPITNSEIDNADRDALLGVFMGQPIHVTDLPTQINNGAFEGYVEGWRWSTRFNELFLTINLSPINFSQVAMRWNTVPVTEAWNTIGNTLTWEYATIVA

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