Scaffold Ga0334979_0007051

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0007051
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7850
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026250	Metagenome / Metatranscriptome	198	Y
F041731	Metagenome	159	N
F048951	Metagenome / Metatranscriptome	147	N
F064670	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0007051_2366_2617	F048951	GGAGG	MKTKTRTRNGYIYPATALLKQFPDDMWASTIAEHLGVGRAAIQTWREGNTCLDQWRADKYACLLGKHPSEIWVNWFDEVEIAS
Ga0334979_0007051_3575_3763	F064670	GGA	MNPMILSDKVAEMIKDLEVEVGIKEVALNSAMRRINELKNQVEELLIENDELRETIRDYGNR
Ga0334979_0007051_4808_5233	F041731	AGGAGG	MNAIEGRDLDQPGDDQAVTYIRERLNGIEGADRARMAMLITQAELAGRSISLKETKSLRRFEIARGLFLLFDSGQFDEDLVKDICSQITSQKYTKPGEALANLDVKQAQRFANACHGIARDLLNLIYIPETNQFHIEEQAS
Ga0334979_0007051_7093_7398	F026250	N/A	MNDPKEGIMTNRQKQAAVGIGMAIMWGFWLLPTAEDLPDAQPATSLEWKLFFVLNFVAIIYIHILNVREHQRQLRIEAQERHWQRMETRARYNHPTNRDYQ