Scaffold Ga0334979_0006191

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0006191
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8371
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F006653	Metagenome / Metatranscriptome	367	Y
F085686	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0006191_2529_2723	F001094	AGAAGG	MKINAKVKAILATYLRAGVASVIALYLAGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGAK
Ga0334979_0006191_6862_7074	F006653	GGA	MTEETLSNKYRDNIKIEALRTDVDAIKVDLTNFVGALLQSGVVELVKDEEGNVIYKINKVVLVDESVQQD
Ga0334979_0006191_8182_8370	F085686	GGAG	MASNAQSKLLLEAAQRYAQEVSPETLVALDERGISELVAAKFQLGTVTDPLNGHEMYDGWISI