NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0004055

Scaffold Ga0334979_0004055


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0004055 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10441
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F027413Metagenome / Metatranscriptome194N
F068843Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0004055_2545_2658F068843GGAGMSLTDEDIAFLIKIGQITEAPKKQTKTQTPTTTESEE
Ga0334979_0004055_6093_7268F027413N/AMATGRDDIDLQCNAGYARMEIVNVNNTAFDIDVTDVLTLELKNSSGTYVPVFGGAVSDFGISVRSPEEVGFITIGSILAVGSLAKLTKALFPDALPKTEDGTQIYDILQELLINSWFEVAPALQWYNYDPTTTWANAENVGLGEIDQPGLYEMISRAADPANSYNLCAQIAQSALGQIYEDKAGRVCYADADHRTAYLSANGYTTLSANYATPSSVKSILQIGKIRNSLVFNYGNNYNNQATALDADSIANYGRYQRAVNSNLHNLSDVNNVMDRELGLRAIPREQLQAITFRLDSGDLPDAERNKLIDVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPANLVWTGVNATLIWENAFGGLT
Ga0334979_0004055_9541_10155F007029AGGAGMGFLDNYEDVNARIKRFRLEFPSGRLVAYIEDLDIIKGTILVKAEAYREYEDHLPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEHNSRPTAQDMEKVETLPADSDPWSTKASIEDMATMASSILEIGKSLGGELLAEAPRCTHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVLGSDGKWKPQV
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