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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033996 Open in IMG/M |
| Scaffold ID | Ga0334979_0002208 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14179 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (77.27%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005233 | Metagenome | 407 | Y |
| F032571 | Metagenome / Metatranscriptome | 179 | Y |
| F045603 | Metagenome | 152 | Y |
| F091622 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334979_0002208_5095_5403 | F045603 | AGGAG | MGLDINILSVPRAVTTKPADAYVGSRYDANPRWKQVAYARSDWDLHDIFCVLYDKRGGTKEDFNNTTVRLYKRDLRLFDASISAPILEHMKKGRVVYAESSF |
| Ga0334979_0002208_6195_6881 | F091622 | GAGG | MHNAYIKLKPNDLHQRLLKERIHPAEMQRIKDEVAEAKEAQRVDKITRTQRKAEWDKVLKPLRYELNNAKVGRAYDLDDDERVDAFDAYILVMETLLSRFAQPLASLDATPIQIAIEKQLPNNGEHWTDWVPDKIKTRIALIFEALPHKTRAKRKVPFQRLTTPEQNAKARDKLLARTRKEIETLERKQEMNSTEVGQATLGRMRDALKIIARLTDTEHIPATWSGVL |
| Ga0334979_0002208_8415_8831 | F032571 | AGGAG | MAVSTRSQVVAIKSESDASAKADIARVALKKQYGRKSKESVKALLLPVFASVWDIKLVKGEGSGTGRMVLNSDADGYEACRKALGRTVTFICGADEGNAVEVPAKLVKKLTNEIIEAGLTQKQFKALLTQLRASVSFQ |
| Ga0334979_0002208_9301_9876 | F005233 | N/A | MLEHLINGEFHPEVVDATAEVLSFEKADPTTTIDAKVKTAEWLKNLELEDEEIETKAEQESARKSFASLVTGQPVGNTQQALANLKTPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILEEVKHPDARIRLKALDMLGKVTEVALFTERIEVKKTEMSDMELETRIKEKLNRFMGVIDVVDVTADKDEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |