NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0002114

Scaffold Ga0334979_0002114


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0002114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14507
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018366Metagenome235N
F019322Metagenome / Metatranscriptome230Y
F028739Metagenome190N
F054850Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0002114_11783_11908F019322AGGMVVIRYLDTYPAATSTTGSPSITTSGGYRIYQWTGSGSITI
Ga0334979_0002114_14167_14505F054850AGGMNVKNWPIVKVTLPADLKGVKPGEVPAHLLRDVQPEGKLHWRAADAYHAMRDKALADGIKPFKPTSAGDTYRSLGMQTTVFLQRYQKQPIAGAQTRTWEGVKWYKKSPTLASL
Ga0334979_0002114_2425_3090F018366AGGVVSAPVAIISPFEQNYWDRFGEGFIASIEALTVKPQEVILVTRARVDVPAWWKVVPYWDDRIWPCVNVGVREASAEWCTHLPVDDTMDPNFFDGLVLQGDAVNVRGRWDGGLCYGTPEQYKNLLNQQNNGMPGLAVIRRKTWLKIPYRSHKYVDWIHWCEMRSHNVEASFDSRCVWTWVRHDDALTAQRDEQAEQEVFNFRRLLESGRVIPGEDWPPKLAE
Ga0334979_0002114_3087_3707F028739N/AMILLDLKDRHKGEEIWVCGSGPSMDWVTPQFFNDKVVVSINDVGFWFGIADFYSASNYSKANPITAKRIDENPDRIFVTPDMDLEASDMTATHVGSGNHVTFRPHAPFWRPDIGWPTDPDALVVGGTSAHIAMHLACYMGASQINLVGVDNGSIGGISNFGKYGDSKAINPEGWSQWFPIVVNKLRELYGVRFFRLQPSLELLVVE

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