NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0001407

Scaffold Ga0334979_0001407


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0001407 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17761
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051073Metagenome / Metatranscriptome144Y
F054806Metagenome / Metatranscriptome139Y
F101274Metagenome / Metatranscriptome102Y
F105304Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0001407_13291_13515F105304AGGAGGMKLNNIVNGIVQSGDPGAYLEQEIEQGLEPITQRVDRLEKKIDLLILTMQRIEEGLKKIQPLYDLLMKLPFFKK
Ga0334979_0001407_14959_15141F054806N/AMSPLPIEKEFRVMSIRRRLHELSRDELEEFLTEALSIMTKLAHQLTELRDYVDKLEGKSE
Ga0334979_0001407_414_686F051073N/AMTFDLIKGSGNRAVTTVKLDSRNTSAQVWWCESKQEWHWMLVWEDGSGPYSTHMHNGIAPTKEKARADIVKTMLFVEDYWPKPEYFENNW
Ga0334979_0001407_936_1127F101274GGAMIPPRFIPPGILQLFEIVDGEKILIQELPTSSRNRHRMNQIRNDLLMVNPTKNYVLSENNAIR

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