Basic Information | |
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Taxon OID | 3300033996 Open in IMG/M |
Scaffold ID | Ga0334979_0001407 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17761 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F051073 | Metagenome / Metatranscriptome | 144 | Y |
F054806 | Metagenome / Metatranscriptome | 139 | Y |
F101274 | Metagenome / Metatranscriptome | 102 | Y |
F105304 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334979_0001407_13291_13515 | F105304 | AGGAGG | MKLNNIVNGIVQSGDPGAYLEQEIEQGLEPITQRVDRLEKKIDLLILTMQRIEEGLKKIQPLYDLLMKLPFFKK |
Ga0334979_0001407_14959_15141 | F054806 | N/A | MSPLPIEKEFRVMSIRRRLHELSRDELEEFLTEALSIMTKLAHQLTELRDYVDKLEGKSE |
Ga0334979_0001407_414_686 | F051073 | N/A | MTFDLIKGSGNRAVTTVKLDSRNTSAQVWWCESKQEWHWMLVWEDGSGPYSTHMHNGIAPTKEKARADIVKTMLFVEDYWPKPEYFENNW |
Ga0334979_0001407_936_1127 | F101274 | GGA | MIPPRFIPPGILQLFEIVDGEKILIQELPTSSRNRHRMNQIRNDLLMVNPTKNYVLSENNAIR |
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