Scaffold Ga0334979_0001407

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0001407
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17761
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051073	Metagenome / Metatranscriptome	144	Y
F054806	Metagenome / Metatranscriptome	139	Y
F101274	Metagenome / Metatranscriptome	102	Y
F105304	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0001407_13291_13515	F105304	AGGAGG	MKLNNIVNGIVQSGDPGAYLEQEIEQGLEPITQRVDRLEKKIDLLILTMQRIEEGLKKIQPLYDLLMKLPFFKK
Ga0334979_0001407_14959_15141	F054806	N/A	MSPLPIEKEFRVMSIRRRLHELSRDELEEFLTEALSIMTKLAHQLTELRDYVDKLEGKSE
Ga0334979_0001407_414_686	F051073	N/A	MTFDLIKGSGNRAVTTVKLDSRNTSAQVWWCESKQEWHWMLVWEDGSGPYSTHMHNGIAPTKEKARADIVKTMLFVEDYWPKPEYFENNW
Ga0334979_0001407_936_1127	F101274	GGA	MIPPRFIPPGILQLFEIVDGEKILIQELPTSSRNRHRMNQIRNDLLMVNPTKNYVLSENNAIR