Scaffold Ga0334979_0000521

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000521
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29344
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (52.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043833	Metagenome / Metatranscriptome	155	Y
F050892	Metagenome / Metatranscriptome	144	Y
F100355	Metagenome / Metatranscriptome	102	Y
F102508	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000521_13580_13756	F043833	N/A	MTCPDADTDALLLQIDAAMAAYSASIDRGLALASEMRQLADAVNSGMSDARAEFNEWW
Ga0334979_0000521_14206_14445	F050892	N/A	MITDPRHRELLQRAIDAQTVVADELQSAYNARIALPIDHPQRLETRDLWRDSKALEALISGAHGLLTGIAGAAALQGRS
Ga0334979_0000521_14579_14923	F100355	AGCAG	MSTKPIPKRRPGPGTRVSGAIYDAVGNSVTVYAHLSADAYQQLKLLQEQTGDTQAGAFRSLIFRGAESLGFRDSVSAMDALAAANGGASDARAVHHLIRLGAGLNPILSNPPTP
Ga0334979_0000521_14920_15261	F102508	N/A	MNRLSDRVSLAEFLDIKRLDATMYHLWGLRASWRAMAKPQRIDALRVAALSLGNIADRQLPPGQRRARCQVAGFENCVLMGAIGLIASALAYTVGVEQGRARFPVGSAETVVR