Scaffold Ga0334979_0000492

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000492
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30099
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (21.57%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F039140	Metagenome / Metatranscriptome	164	Y
F041764	Metagenome / Metatranscriptome	159	N
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000492_10824_10955	F041777	N/A	MKPNNQMKKQLLYIALLFGAMLIAGTIDEQTRQLEQQPNHYSK
Ga0334979_0000492_1568_1816	F027518	N/A	MNAETEITLIHEELQNMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYISNQRLQVARLGGIATAAGVVGGLIVQLIIKMI
Ga0334979_0000492_1813_2079	F039140	N/A	MKDWLKSLLSNCSKVSSKRVIAIFVVTNLILLSYIATFSEYDCPIAMYDTLALLTAGLFGGTVIEKFTKKTKNGKGTNDSENNSSGNL
Ga0334979_0000492_18380_18982	F036240	AGGA	MANESSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAVASGTLEKSLAYRLKIKGKAIDISVYAKGKAGQYFLFREKGVNGTQRSQGAPYSFKRGSGSKPAKGQMSPMQQAIYDWMSIKGIRLRDKSSGKFKKSSEELKQTVAKLIMFKVRRDGIKGWNAFEYAFDNIWDEYESKIVEAYGKDFNAVLENELKDI
Ga0334979_0000492_18987_20222	F028175	N/A	MAITIEEQPYEYTPVGQRLMIVCRSTNVANAGFRFVFDFGAFQVNVQPNAQNKGMLDLAPIFRESLQHDASILTTTNTTENSSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQISDGYKPDPNVRYGMDGITKYLMSERNVDTHKWSEAAARGLSSDYVYIPTRVADYGVLYAPSATALLPDNDFDIAVFSTYGNDNVLIDTVNVNLSSADNLVNVIGANPMNLMSGGLDFTGVKYYTIQIGKEIAFPVYTPASRVYCFYIVPDDCRFDNVRLGWTNTVGGVDYFNFTKKSELSFNYDRKQYQKVVGSYNTSSFTFNTWDRGATDRYVTTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0334979_0000492_25864_26040	F041764	AGG	MNIEAGGFLKLELFNDDANLFLLALTKITNEGGKMGFKSYGLTEDEMKTLNSILDSLG
Ga0334979_0000492_3170_3751	F021113	N/A	MDKREYQPDALIVIIATSVFWMLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQITAKETYRTRRDTILVLDTIRKTDIVYLINSCDSVIASDSLVIDNLQEQINIKDEKTNNLEETVVAYEQKTNLLSEQINTLNVENKKLDKQKKRRNHALVFSSSVAILSTFVLSILL
Ga0334979_0000492_3880_4104	F019140	N/A	MKPTPLYEALKITQEREREIINSVASYFQQGKVLGDVLLELSKRKDMNAKEKIYCALMIGSMMTKNNEDGAEQN
Ga0334979_0000492_6461_7069	F012871	AGG	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVVFIGDVLTHYKPHRDKANLQIQREIAESKEEQSKQLKEKEMAVNDDSWRRMLAEDIASYKKGKYTVIEIRAVSLMRWLEESKQITIDTFTDEEYKLCKAKARKNIYFEQQLNKPMVERMSDRKRQLLKESIAFEGMRELYKLYLSKQ
Ga0334979_0000492_9895_10185	F045753	N/A	MYCPKITYCFIGDDIRTLNERIKAIANNYNDDETGWFEVDEKQHLVFIDEQDNMYTIHLRGRFWRKGEPDFNLEYVTLEKDGISFSFDVDIFDDHF