NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000492

Scaffold Ga0334979_0000492


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000492 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30099
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (21.57%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012871Metagenome / Metatranscriptome276N
F019140Metagenome / Metatranscriptome231N
F021113Metagenome / Metatranscriptome220Y
F027518Metagenome / Metatranscriptome194N
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F039140Metagenome / Metatranscriptome164Y
F041764Metagenome / Metatranscriptome159N
F041777Metagenome159Y
F045753Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000492_10824_10955F041777N/AMKPNNQMKKQLLYIALLFGAMLIAGTIDEQTRQLEQQPNHYSK
Ga0334979_0000492_1568_1816F027518N/AMNAETEITLIHEELQNMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYISNQRLQVARLGGIATAAGVVGGLIVQLIIKMI
Ga0334979_0000492_1813_2079F039140N/AMKDWLKSLLSNCSKVSSKRVIAIFVVTNLILLSYIATFSEYDCPIAMYDTLALLTAGLFGGTVIEKFTKKTKNGKGTNDSENNSSGNL
Ga0334979_0000492_18380_18982F036240AGGAMANESSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAVASGTLEKSLAYRLKIKGKAIDISVYAKGKAGQYFLFREKGVNGTQRSQGAPYSFKRGSGSKPAKGQMSPMQQAIYDWMSIKGIRLRDKSSGKFKKSSEELKQTVAKLIMFKVRRDGIKGWNAFEYAFDNIWDEYESKIVEAYGKDFNAVLENELKDI
Ga0334979_0000492_18987_20222F028175N/AMAITIEEQPYEYTPVGQRLMIVCRSTNVANAGFRFVFDFGAFQVNVQPNAQNKGMLDLAPIFRESLQHDASILTTTNTTENSSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQISDGYKPDPNVRYGMDGITKYLMSERNVDTHKWSEAAARGLSSDYVYIPTRVADYGVLYAPSATALLPDNDFDIAVFSTYGNDNVLIDTVNVNLSSADNLVNVIGANPMNLMSGGLDFTGVKYYTIQIGKEIAFPVYTPASRVYCFYIVPDDCRFDNVRLGWTNTVGGVDYFNFTKKSELSFNYDRKQYQKVVGSYNTSSFTFNTWDRGATDRYVTTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0334979_0000492_25864_26040F041764AGGMNIEAGGFLKLELFNDDANLFLLALTKITNEGGKMGFKSYGLTEDEMKTLNSILDSLG
Ga0334979_0000492_3170_3751F021113N/AMDKREYQPDALIVIIATSVFWMLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQITAKETYRTRRDTILVLDTIRKTDIVYLINSCDSVIASDSLVIDNLQEQINIKDEKTNNLEETVVAYEQKTNLLSEQINTLNVENKKLDKQKKRRNHALVFSSSVAILSTFVLSILL
Ga0334979_0000492_3880_4104F019140N/AMKPTPLYEALKITQEREREIINSVASYFQQGKVLGDVLLELSKRKDMNAKEKIYCALMIGSMMTKNNEDGAEQN
Ga0334979_0000492_6461_7069F012871AGGMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVVFIGDVLTHYKPHRDKANLQIQREIAESKEEQSKQLKEKEMAVNDDSWRRMLAEDIASYKKGKYTVIEIRAVSLMRWLEESKQITIDTFTDEEYKLCKAKARKNIYFEQQLNKPMVERMSDRKRQLLKESIAFEGMRELYKLYLSKQ
Ga0334979_0000492_9895_10185F045753N/AMYCPKITYCFIGDDIRTLNERIKAIANNYNDDETGWFEVDEKQHLVFIDEQDNMYTIHLRGRFWRKGEPDFNLEYVTLEKDGISFSFDVDIFDDHF

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