Basic Information | |
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Taxon OID | 3300033996 Open in IMG/M |
Scaffold ID | Ga0334979_0000348 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36190 |
Total Scaffold Genes | 59 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (16.95%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Associated Families | 10 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001775 | Metagenome / Metatranscriptome | 636 | Y |
F005529 | Metagenome / Metatranscriptome | 397 | Y |
F008073 | Metagenome | 339 | Y |
F024318 | Metagenome | 206 | Y |
F030017 | Metagenome | 186 | Y |
F034147 | Metagenome / Metatranscriptome | 175 | Y |
F044503 | Metagenome | 154 | Y |
F049637 | Metagenome / Metatranscriptome | 146 | N |
F059884 | Metagenome / Metatranscriptome | 133 | Y |
F104771 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334979_0000348_10345_10941 | F008073 | N/A | MEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMTEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKESEPTNEEIAYWIEVGKQIFRKNYQYAKETGYCLDISEWGMNWFNKFQEKGILKPWEFNVEEMENDVRKELRLTVRYVDETSVGAKTKNKIWKLFILQAIRENKDLDKLI |
Ga0334979_0000348_11787_11936 | F044503 | N/A | MRGRSLTEYEKELIFEGWRDRKQIKVIAQEMGLSYGCIYFQLKKRCLVG |
Ga0334979_0000348_12962_13294 | F030017 | N/A | METQEIIDEIKRLYIEGFTRKKIAAKLGLDAEKVGYLLYTKMKLHEIHPRKLMDENIFKILSDHQISRILTLATYGYCCREIAEDQNIEFRKVKKLLDVAEAKKMIEKKI |
Ga0334979_0000348_13276_13413 | F024318 | N/A | MSNYIYLGKFIQRPADLAPRGVKSTYQTEKLPFNETFERLWKLKR |
Ga0334979_0000348_14460_14735 | F104771 | N/A | MGKLFNDSEMYLDQEVLFFYEGEEYCWTGHYEVKQCGEEADWDYCGDSEVEVEIDTTKSITKFNEETNGWDEVTITNSLIYELVLHIERDL |
Ga0334979_0000348_15966_16514 | F001775 | GAG | MEFSTDNQKIKIATLSFFAGILVAYIFFPKIESETVYKFETVTKTDTLFVDKLETVYIPQTKIKTEVLRDTILIDFKPQISQFKASFPFEHGSTSISGEVLGEVLKMTASNDYKIPVVTNTITNTETKTIIEKPKGIYLGAGINSLMQPSGKVAYLDNKYLFEYQYQPLQKIHQIGVSKKLF |
Ga0334979_0000348_18397_18612 | F049637 | N/A | LVNEKVLNEMNLLKSDELGVPSTFLAIFANVTAMAGLQMVNVVFTSVISILSIIYLVYKIRNEIKKTNGKV |
Ga0334979_0000348_28556_28885 | F059884 | GAG | LLLVGRTKIPYEQLFHLSRKELKVLVKGHEIDQKDMIEAMRKQSIILLQPHLKKGVNLDPTKIWPLAWDNIPKPLESTPQDFAKAKKLLEIASKLEKNGKSKNRGRDWR |
Ga0334979_0000348_28927_29256 | F034147 | N/A | MAKYHFTPFKEGEIFFYPNLGALANFEDFTGKSLGEVFQNGKMPKLDLIYALLIECHKVACIRKSANPISLDELKTWVEGKEVINLFNDVLADLLLELGIGESTEEKKT |
Ga0334979_0000348_8258_8509 | F005529 | N/A | MAKGYPISKPDYSLEIRYRLRDGQWSPWSNKGKGKFESMDIVQRQIRTLAASYQGREKEVRFEWNGKLCNFTGEPTGQTIILM |
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