NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000348

Scaffold Ga0334979_0000348


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000348 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36190
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (16.95%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F005529Metagenome / Metatranscriptome397Y
F008073Metagenome339Y
F024318Metagenome206Y
F030017Metagenome186Y
F034147Metagenome / Metatranscriptome175Y
F044503Metagenome154Y
F049637Metagenome / Metatranscriptome146N
F059884Metagenome / Metatranscriptome133Y
F104771Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000348_10345_10941F008073N/AMEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMTEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKESEPTNEEIAYWIEVGKQIFRKNYQYAKETGYCLDISEWGMNWFNKFQEKGILKPWEFNVEEMENDVRKELRLTVRYVDETSVGAKTKNKIWKLFILQAIRENKDLDKLI
Ga0334979_0000348_11787_11936F044503N/AMRGRSLTEYEKELIFEGWRDRKQIKVIAQEMGLSYGCIYFQLKKRCLVG
Ga0334979_0000348_12962_13294F030017N/AMETQEIIDEIKRLYIEGFTRKKIAAKLGLDAEKVGYLLYTKMKLHEIHPRKLMDENIFKILSDHQISRILTLATYGYCCREIAEDQNIEFRKVKKLLDVAEAKKMIEKKI
Ga0334979_0000348_13276_13413F024318N/AMSNYIYLGKFIQRPADLAPRGVKSTYQTEKLPFNETFERLWKLKR
Ga0334979_0000348_14460_14735F104771N/AMGKLFNDSEMYLDQEVLFFYEGEEYCWTGHYEVKQCGEEADWDYCGDSEVEVEIDTTKSITKFNEETNGWDEVTITNSLIYELVLHIERDL
Ga0334979_0000348_15966_16514F001775GAGMEFSTDNQKIKIATLSFFAGILVAYIFFPKIESETVYKFETVTKTDTLFVDKLETVYIPQTKIKTEVLRDTILIDFKPQISQFKASFPFEHGSTSISGEVLGEVLKMTASNDYKIPVVTNTITNTETKTIIEKPKGIYLGAGINSLMQPSGKVAYLDNKYLFEYQYQPLQKIHQIGVSKKLF
Ga0334979_0000348_18397_18612F049637N/ALVNEKVLNEMNLLKSDELGVPSTFLAIFANVTAMAGLQMVNVVFTSVISILSIIYLVYKIRNEIKKTNGKV
Ga0334979_0000348_28556_28885F059884GAGLLLVGRTKIPYEQLFHLSRKELKVLVKGHEIDQKDMIEAMRKQSIILLQPHLKKGVNLDPTKIWPLAWDNIPKPLESTPQDFAKAKKLLEIASKLEKNGKSKNRGRDWR
Ga0334979_0000348_28927_29256F034147N/AMAKYHFTPFKEGEIFFYPNLGALANFEDFTGKSLGEVFQNGKMPKLDLIYALLIECHKVACIRKSANPISLDELKTWVEGKEVINLFNDVLADLLLELGIGESTEEKKT
Ga0334979_0000348_8258_8509F005529N/AMAKGYPISKPDYSLEIRYRLRDGQWSPWSNKGKGKFESMDIVQRQIRTLAASYQGREKEVRFEWNGKLCNFTGEPTGQTIILM

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