Scaffold Ga0334979_0000211

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000211
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46197
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (35.06%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F004049	Metagenome / Metatranscriptome	455	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F010673	Metagenome	300	Y
F012111	Metagenome	283	N
F032582	Metagenome	179	N
F057903	Metagenome / Metatranscriptome	135	N
F082111	Metagenome	113	N
F086598	Metagenome / Metatranscriptome	110	N
F097203	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000211_1211_1843	F004664	N/A	MSSNVTGYKVLNEHMVIPGGWHYRVPETGIEIMGGSWPQLHEFVRNHYTANAIKIPENLDTLITEYSCRNGADCMYNEVEIRKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEATRRASICSTCTYNRKPLGCTGCNARVLKEAVKTFSQHGSTPLDESLQSCEFCGCFIRSMVWFPIETLHKFTDATENKNLPAHCWKKRPCTET
Ga0334979_0000211_14013_15251	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNPSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPIFPSQGMTIIFRRCTGALTQVICS
Ga0334979_0000211_16147_16596	F000922	AGG	MRIGKQAWEKAKALYFAGQSWETIANDLQLNKATLTNKASIEGITKVKAQMQTVCIEKKTQSLEALSAIVRSKLAADAASTLERIDSYSLDGIKDESVRETILGSVAKRSALVFGWSEQGESASVSINLLGSMPDRIAEIQVTGESDSK
Ga0334979_0000211_16884_17255	F097203	N/A	MNYPETIPAAFASDSTLERAYRLGWNHGHGIACHNVPSIGDAIDRSIDWIGLGKTVTPENIAEYHECICYAAEINSREYSPFEFIAHEFNESDDANELWEAFESGVADSIRNDLKSYSYAELV
Ga0334979_0000211_19055_19648	F010673	N/A	MNPKLIPILERIIARETILQSFHADNLPQSALAYVRHTYAMCRSLSWEEQDLIETLPPFADNISESFREGSGGDASIYHLFDDGSLWIKTNAYQQIWADARDFAVESILPLMRLDRMDADLLRAIGMDDHVDEVRDDFFGAFAHVLHRDCGIPHCDARERWYQFCQSSRESDRLELGGYRQGEAEAREYLEWIKTIA
Ga0334979_0000211_20428_20661	F002227	N/A	MKLTIQSKTNAQTIVDLFNAIINGECETPGVTPLSIYDDDRHICSLIDADDHQILELIIEREIGDKLVQTGEPETLQ
Ga0334979_0000211_20960_21205	F001964	GGAGG	MIRNQFAPPKFKIQISGAIGWSDMKEKVVSYQTVEFASRKEADRAAKELNPGEYTQGRIRVVPFEMAEDYDVYPTPERSKP
Ga0334979_0000211_22389_22838	F086598	N/A	METDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALKRSSYQDVDDDDTWEGFGPKPECQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGQNGTPEQVAYLQRIEARLGRKIFENPLATT
Ga0334979_0000211_25041_25478	F003748	N/A	MFQVNRKEAAGGRYIDTEGDFQVTLIKVEENLDPKGREVCKLTFRTEDGASISDRFLNQENVWWRVNSLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLELAITVRAEEYESNGEKKKAYRIKNMKAAPAPTAPDSDEEKPF
Ga0334979_0000211_28358_28591	F004049	N/A	MVGGKMIVPIGPAAFVFRHNRTGQIVVAPSERWHEYYDKKEDWEHTASVNACGALQYIIDAKPAERKRYIKSLTEKP
Ga0334979_0000211_32072_32308	F057903	N/A	MTLGIAVDQDISTTLQTMKYRNSAKSSVEVELLSDDVEIRIGETKWAGVAYMREGKSKVYVRTKAEFKAKFVLVDAKP
Ga0334979_0000211_39820_40791	F005740	GAG	MKLIVQDIRSTIARAIGVCVDDARVYEYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLIDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGVWIDGEKLTLALPYTQSTKKFTTLTGVIREATNTASRLYEYDATTLLELDLAVYDPDETLPQYRRSYLADRCNNEDDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0334979_0000211_41518_43380	F012111	AGG	MSERAPRRYTDGTVTFEGGIDAGVMPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKDYDLCVTITADNDQITADQTNVTADGWSEDCYGPQSLTGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNNAQSLTTSPDLENPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTSLRRASDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEMLNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLDVLQIVKTENAYGDQCFCIARGSDDSIQIWEVTKADKFDNNIPDGKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFSVTYRPDQYPGWIEWTDFSECATTTQCLDLCPIQNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVAMNIIGYCRIKSLRVHAYDIQEPSVGDCRTVFPACTPISACDINPLTYTSESVNP
Ga0334979_0000211_5899_6528	F032582	N/A	MRVDFENTPTFIISKPESEKEKRCVRYMKSFGIDAVPIYGFRSHNCGISTDYYHSREKEKVKVKTIVAGLSHFAAWSAIKWMVEAKLTDHRTFLIVEDDVEFLDKSWKALANDNLQFVPNDWHVVYLGSCCADPIEDHGYIAANLYKLVRGMCTHAYLVNYEGACKLLETNQKVWGPIDIQMLVDSMPRMNFYGILPRLATQENTNLYP
Ga0334979_0000211_8156_9310	F082111	N/A	MDEPLNSPIVSNGQTPDFGSSFIDAFKAIGADNATPAEKPAVTAAPQKTDNTPPKLSKSEMDIERMFSKKTAAEPSAAAPAAPDDADIPETIKSTKAADAFRKIKEEKAQLAKQLDELKAGKSTNPQFESQLKTLQEERDALSERVRLLDIERHPDFIKKYEGKITGVFDSVKNLVGTDGERLVSLLKSPDSDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERSSELTEAKADYDAVISKYKQDNEEGTKAALESANKTWQKVSTDARSLEIFEPRENDDEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELTKYRGSEPGVTSKATSGGYRPANANAAKSEDFVASVMKSLGR