Scaffold Ga0334979_0000206

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000206
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46979
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (46.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N
F068565	Metagenome / Metatranscriptome	124	N
F072266	Metagenome / Metatranscriptome	121	N
F085631	Metagenome / Metatranscriptome	111	Y
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000206_14086_15177	F034904	GAG	MRKTLAQAKNSTIPQAVGLATCDDRFVQLLNEAQARLADMGKWWGTYKKLRICVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCKFRVYPSLTADAGKRILLQGIDPATNEPIRTLDPVSGEYVWGEYVTLPNPAVTPFVETSNLFKQPGLNGAQKPLTQGRITIVAYNPTTTLSTQVAVWGPSEENPEYRRTYLINMPEVCGGTAGCNSSQDNCCIDHGDGCVPPEENCTNTVIEAIVRLEFIPAVVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQYRFGGFI
Ga0334979_0000206_19322_21361	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKGLTFDDPDVVYQGGYYNRAVRDSFLNGFFQGCGTYVSDSGAPYLFASISGKVYQIDIQNGFKVTDQTPIGFQFTVLTRGRASNVATYVCSAPHGLSPGMVVRLPEPVGAFFPTGFFGDFVVDSVPSPTTFTTYSPGIDAGPLLGPLFIGYQMLANNPQAPHVYFQQAENWLVVQDTINVPYLYNGATIRRATGEEVPTGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFLAEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDAWKDLNYPIQRFALLNFGSFNHESIVAVNGDLFFRAQDGIRSLIYARRDFTEWGNTPVSRQVVRALAYDTEFYLYAASAVNFDNRMLMTTQPKKVNGRGIVHGGAVVLDFDLVSGMGRKVAPAWEGVWTGVDFFQFLTIRIQNADRCFAFGLNQGDIGLYEVTKNGQFDFDGFDDAPIDWVIETRSLTFAEPANKKRLVSAEQWYDQVMGSIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPAARSRIALPQPPDKCDIQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSA
Ga0334979_0000206_26522_26785	F072266	N/A	MIQSPKQEFQRNKERVMALERVLDSPDFQTALMAAFNNLCWNLPASENPQHGWNANCRRQGAKALIEELHGLVSMQREKPTVNQNLE
Ga0334979_0000206_29486_29731	F068565	N/A	MLIERTIFSLCEVLPNTTLQVRMANQIVDGDVVKASTYNRYCLTPGSDLTGQPPEVVKIANAIWTPEAIAAYNANLKPTLK
Ga0334979_0000206_31390_31689	F097235	N/A	MLAASQQGKDFTMYGQMMGKRKMDGMGRMGPEVETVEFTPPKELKLEGESGTAMVDWRTTPRGTIEIIGFDGITLGESGRQDMEEDAIENEMDDMEEEA
Ga0334979_0000206_31762_33366	F028149	AGGAG	MAAGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGSWENPTGASCSGQPCDPTENKIGWGWTRNTYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGSLAGGNAFACAAGLPPINFSWVGAGYTTLRVTDNAAAAITAASLGKLTPEILQSRVTRQYFLGAIQAGKDGYDSLQLHTDKDTFRYLSKTNATLYDAWRFGVFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFNATATPGNYTLVLPYKNVAATEGIKSVFNEDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCVEIIPVCEADPGNPAQSYNSADPVCGVVVQFTAVPNDAGNYVIGTTGIMCDDNIVTNAGISEATPAALVAALQTVWDAEFGTASGTWSVVSGNLIQLAGSALGTTTEVVPCTNVTLEFAI
Ga0334979_0000206_33578_33751	F085631	N/A	MKNTIRVSYRLPIEVAQMLEEEAIRSRRTKTAVLIIAIEDHVMRSAIKKPVDTRKTR