Scaffold Ga0334979_0000072

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000072
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78200
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (33.04%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F008080	Metagenome / Metatranscriptome	339	Y
F046324	Metagenome / Metatranscriptome	151	N
F048935	Metagenome / Metatranscriptome	147	Y
F057138	Metagenome / Metatranscriptome	136	N
F069711	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000072_17751_18446	F057138	AGG	MKRILTLLSLVVSLFATKALAENVKASTEAGYMSHYIVNGVARTEAQAFGAVNIGATYLGVDAYLGGTIIPVSSALDESHWTAGVGKGFKIVEGVTVRLDGQAFRHLTAIPGAPNSTEVAGILAIENIVATPYVKGTHDLDLDQTGYVVGLKRPTDVFGWFTITPLVEYGKFTDYDFKTAKLTVSKLLFNHLEPFAEVGYYDNNFGVSKYNFAIKELNDSVVAVGGLRWNF
Ga0334979_0000072_21926_22546	F003904	N/A	MNEIFSNIKKYLLVILLPTALLVILSISCLKDIEKAFVRFRFGRDITLYLRKSTDHLTYLGAAYTATGDKKFIEQFNGHLKEREKYFNNEVFISKILTQEELKEFRVGLDISNELAKEVEGPAFEKMDSKAFFGEKYLDYKKKIYDSKDKFRTLINDSSERIIKEETQLLNIYLYSLCLIIIALVYLIKHDNHPVAQKKPIKKKKK
Ga0334979_0000072_22555_23511	F001732	N/A	MKKSLLLLSVLLVLTGCFSTIKPSKQIDDNQKVIAKEEKKVDSTLVEIEKNDKGKRIQTSGLSVGIQHSLNQITNAPVQVDTARKLNERVISIVGSPHIDEMKRIKTTVDLLNSALVEERKKGEELLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVLWGLKKFIISTLTTIIIFVVLFVILRLLATVHPAAAAAFSIFNMLGSALISVLKALTPKAFEMSNFTSKDKVEEFKAPLVKIVDVIQDLKERQKEFPDRVYPITEALKRFDKEMDSHEKDLIDEILKEQKWIK
Ga0334979_0000072_26638_26835	F069711	N/A	MKFTPEQRDLIKETRRKIQKLEDEQTALFTNLSNQLDVPTKAEDWLFDYVYNNYGTIKKIESLLK
Ga0334979_0000072_272_433	F046324	N/A	MTCLKFKKEAKLEECAVPWSGDTISVCDKCRMSIWDFDFDEFHIMNDGEPFVN
Ga0334979_0000072_430_1017	F048935	N/A	MENSETIMETKTKNLNAEFKKATKSQKRVMIAQDVLAQLKAKRYVAESGCWVQANYNPTATWADIKYTDSVQELFVEKKIESCNVCALGGLFMSCTNFNNNTLLEDLDDVSEDLGNLIDEKVNLSNKLNKIFSTSQLKLIETYFEANGGYFRDYDEDDRIEVFYNKYPSDKKRLQLIMENIVENEGTFVPAKLKI
Ga0334979_0000072_6252_6830	F008080	GGA	MLKIKIWMRGTNEYNRDTIDGPTPEQTQEQFEDAFRDGDECFCGGDVYETCPYFSADGYDSINVYLGGDEYIKNQEEPIFTTSDWSRFQFEKGGGCNYIPQEPDEVGKVNIWWYHDMKFNYIYYWENVTEFDPKKLTVQYGVDQDGQKYLEEVYYNGEAPDDYHDHGDTGYGYTGPEFVYHPEQKFAEEDED