NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335003_0225977

Scaffold Ga0335003_0225977


Overview

Basic Information
Taxon OID3300033995 Open in IMG/M
Scaffold IDGa0335003_0225977 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017998Metagenome237Y
F038234Metagenome166Y
F062757Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0335003_0225977_332_610F038234N/AMLTIQNIDSLKGTYVGHWKIHYVAELQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDIFIRFLIDELI
Ga0335003_0225977_615_881F062757N/AMLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYLFDIHCNGPIGNRIDGCMISLNRIGQLQRTMGRPAELAYFLYYNGERTDVCVTKDW
Ga0335003_0225977_80_319F017998N/AMNLERLDLEKYEVLEQERNSTIADPLYQQWMSELGVSSSYSDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSVFK

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