NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335003_0011682

Scaffold Ga0335003_0011682


Overview

Basic Information
Taxon OID3300033995 Open in IMG/M
Scaffold IDGa0335003_0011682 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4613
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029732Metagenome / Metatranscriptome187Y
F058715Metagenome134N
F059002Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0335003_0011682_2191_2373F029732N/AMKYLSKTKPTVEVEFVAEAQLRIGEIKRLCVIYQRGEIFYVRPKAEFFDKFVLDEPQIQT
Ga0335003_0011682_3393_3665F059002N/AMNILNEIKNGISRLLGVHKTLETKEAPRTLKPKRSPKRGRGRPKGLKIPQQIVDAVRQADKSMTNKQLAAKYRVSYFWVWSVRSNKLRLN
Ga0335003_0011682_3832_4074F058715GGAGGVSLLEKLGLSKESMEKMLGVVAPLKKTKIKRYRRYETVPADIRKAILLEHSTYTCRELAKKYGISSSTIWDIRDSKSKTE

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