Scaffold Ga0335003_0002501

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0002501
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9027
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia multivorans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F048800	Metagenome / Metatranscriptome	147	Y
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0002501_2086_3048	F014513	N/A	MGDTLKEMAELVKGFVGDSGVCSDERAFKAINQARRLLWNKRAWSSQEEYVQICCVNDCFTLPNRYEQIKLAWVGNESASLADEWFNATNAFALNADQSCHRLITEVGGKHVLFRDYTTHFYRLGVMLESAEDIGVTLTFEVQDQYDTYHTIKVTGVNPPTLAQSDLLIKGVRSVSKPATKGRVRIYAYDTSLEAKTLISVYQPNDVNPSFRRFKAPKTCECITLYASKRYFDLVDEQELVEFIPDAMIYAILALNSRDNRKAQEFLMNLDLAIKEQEKEMEGEEIPTAAPIRFANYSRAENLIGSDLLSPSANDYFLYR
Ga0335003_0002501_3250_3777	F048800	N/A	MDNQDSSPALTFPNVPIDFCPTGNWSEILQEFIDVVLVNGTINVPGLGDVTPEQIAQIEEDLADQQNQIDALEAEGTALDLRIDVLEANPVVKVRYGTISSIPTGDSIQTVSFTGLPTATYGASITPICGATISAQPTPLFSLSTGSKTTTGFSIRIENNIAEITSVDWMAVHTS
Ga0335003_0002501_3770_5617	F097170	N/A	MPADGSVFDGFTSIVAQDADTHPSYLPPSMVAESVNRTFRGGINRTRPSIRNIPIVAGEGQDEIIVNDIQNGSFQGSYPYRATNLNTNDGILLSVSGVIYFLKVVNNIAYAYKLIEGNDPGMMHTFFVQAEDRVYIQNGYQNAIAWDGDLSVPAYRLNPYLKKMPIGTIMEYAFGRVFVTDRLNQIYASDIIYGNGFTDTKNTENFTEIGYWAEGGAFSTPSMMGNITGMKVMPQIGTNLRAQGALVILTANGAFAMDVSIPRAQWATTNMQTISLLGRGCVSPSTALANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVSNDTPWLKQFASTMFFDNYLISTVAPETYRAAGVEGLNRYHRGMVVLDLDQSSSPSPDAQLSFRWNGIWTGFRPTQLLSALITGQKRGFGFSFDNDNKNRLYEFTNSTGSDFGANGTRQIESFFTSGRYDFAQSGASNKFLRKRITGGEMWLSEIKGEVTSKAEFRPDSYPCWSELKVPTTYGCNPCSPVLKTPCNPRRGGDSYKRYKFNSPDPSECNYISDIPVIEGSEFQLKINLTGTATVDRVRIMANIKNLEDSPIGDCPENDQECPDINCCPERYYDYSING