Basic Information | |
---|---|
Taxon OID | 3300033995 Open in IMG/M |
Scaffold ID | Ga0335003_0000643 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 16819 |
Total Scaffold Genes | 37 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (2.70%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000716 | Metagenome / Metatranscriptome | 923 | Y |
F010462 | Metagenome / Metatranscriptome | 303 | Y |
F021963 | Metagenome / Metatranscriptome | 216 | Y |
F028489 | Metagenome / Metatranscriptome | 191 | Y |
F048248 | Metagenome / Metatranscriptome | 148 | Y |
F074450 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335003_0000643_11048_11467 | F048248 | N/A | MNISVTYDDTDVAKALGKIIKDPNAEEFIKLITPMICTSSYATEYFFKLMLGNKLFNVIPNGTLCKIPVNNLGYGSNKDAIRQKFADEDDKVVVIVKEFRGYHEYSQYHIEYTSVLDNGVTKKDTTYVQHKDLEVIEEF |
Ga0335003_0000643_11619_11900 | F010462 | N/A | MPVMQYQLPNGKVVHLSIEEYLDLTDEDVQYLMSIDYGEHVRDPFTGSAVENNSKEKYYDFEFLSQDDEILNDICSDDLPFDDIIDLSDNLDL |
Ga0335003_0000643_12543_13031 | F000716 | N/A | MIKMEKLKQQIKDYQLYAGKTYIEYEQDKYSAYQNYLYKRALYGLDAIEQKELVTMCSKKKQRIINVYKRAQSILNIAKQKATIHYTNLLFKTFFPKSPFTQLLLGETETDEKFKNTLTFKDLNISKDDIINIFITEGVLPKNFLSLDKDPNQLPRLKNEKL |
Ga0335003_0000643_13810_13986 | F021963 | GAG | MVKVNGCGHGATDVHHTHSGVNRDAFYLVQSTWLSVCRNCHNWIHLNPAEARILKHLK |
Ga0335003_0000643_14008_14745 | F028489 | N/A | MKTIGKELKVKHTIEYSKFAILPMNRGIDSKHVQKMITSVRKIGVIRAVITTTTNIIEGDKKTYIIDGQHLATALEREGAPIPYIEIDITSEEELIEKMAYLNNSSKSWDLMNYINAWKMIRPDYMKLFKWKNMYDIEVSMLACIATNMPSIRYGTQPIKNGSFTISNSKAEDMCKAFNDIFLKIGMADRGVKFQFLNAFMVAYGTYNHTKVLANIDKHLKTVKLMANGDETGVYIRKQIFNLPK |
Ga0335003_0000643_16372_16809 | F074450 | N/A | MEDYTKDDVIKALSQIPVNSRKRVLVDQRSYLMGLLVYRFMMTEHAIANIVGIKRDKVHYNKKLALQLCTDKSYMQNVYVYAQMFPFDFSVIEATSSVHRLKTVELVLDKKFFNKLKATGSVLGHNDIRTTIKFLLEKSMKLWEE |
⦗Top⦘ |